Data files from microarray experiments used to populate SPELL (Serial Pattern of Expression Levels Locator). These files are mostly in PCL format and are not regularly updated.

Published Datasets

This directory contains files from published work. Some of these files are not regularly updated. Please note the date associated with the files and see the accompanying README documents for more information.

Name Description README
[DIR] Abbott_2008_PMID_18676708 Physiological and transcriptional responses to high concentrations of lactic acid in anaerobic chemostat cultures of Saccharomyces cerevisiae. [TXT]
[DIR] Agarwal_2008_PMID_18156292 Role of heme in the antifungal activity of the azaoxoaporphine alkaloid sampangine. [TXT]
[DIR] Aguilera_2005_PMID_15780657 Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations. [TXT]
[DIR] Albulescu_2012_PMID_22479188 A quantitative, high-throughput reverse genetic screen reveals novel connections between Pre-mRNA splicing and 5' and 3' end transcript determinants. [TXT]
[DIR] Alff-Tuomala_2016_PMID_26454869 Xylose-induced dynamic effects on metabolism and gene expression in engineered Saccharomyces cerevisiae in anaerobic glucose-xylose cultures [TXT]
[DIR] Almario_2013_PMID_23613173 Evolutionary engineering of Saccharomyces cerevisiae for enhanced tolerance to hydrolysates of lignocellulosic biomass. [TXT]
[DIR] Alper_2006_PMID_17158319 Engineering yeast transcription machinery for improved ethanol tolerance and production. [TXT]
[DIR] Ambroset_2011_PMID_22384338 Deciphering the molecular basis of wine yeast fermentation traits using a combined genetic and genomic approach. [TXT]
[DIR] Anderson_2006_PMID_16896209 Antagonism between two mechanisms of antifungal drug resistance. [TXT]
[DIR] Anderson_2009_PMID_19273689 Gene expression and evolution of antifungal drug resistance. [TXT]
[DIR] Angell_2006_PMID_17185230 Pyocyanin isolated from a marine microbial population: synergistic production between two distinct bacterial species and mode of action. [TXT]
[DIR] Angus-Hill_2001_PMID_11336698 A Rsc3/Rsc30 zinc cluster dimer reveals novel roles for the chromatin remodeler RSC in gene expression and cell cycle control. [TXT]
[DIR] Ansari_2012_PMID_21971086 Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast. [TXT]
[DIR] Apweiler_2012_PMID_22697265 Yeast glucose pathways converge on the transcriptional regulation of trehalose biosynthesis. [TXT]
[DIR] Aragon_2006_PMID_16507144 Release of extraction-resistant mRNA in stationary phase Saccharomyces cerevisiae produces a massive increase in transcript abundance in response to stress. [TXT]
[DIR] Aragon_2008_PMID_18199684 Characterization of differentiated quiescent and nonquiescent cells in yeast stationary-phase cultures. [TXT]
[DIR] Aristizabal_2013_PMID_24009531 High-throughput genetic and gene expression analysis of the RNAPII-CTD reveals unexpected connections to SRB10/CDK8. [TXT]
[DIR] Auld_2006_PMID_16543154 Genomic association of the proteasome demonstrates overlapping gene regulatory activity with transcription factor substrates. [TXT]
[DIR] Azzouz_2009_PMID_19155328 Specific roles for the Ccr4-Not complex subunits in expression of the genome. [TXT]
[DIR] Backhus_2001_PMID_12702356 Functional genomic analysis of a commercial wine strain of Saccharomyces cerevisiae under differing nitrogen conditions. [TXT]
[DIR] Baerends_2008_PMID_18378663 Engineering and analysis of a Saccharomyces cerevisiae strain that uses formaldehyde as an auxiliary substrate. [TXT]
[DIR] Baetz_2001_PMID_11533240 Transcriptional coregulation by the cell integrity mitogen-activated protein kinase Slt2 and the cell cycle regulator Swi4. [TXT]
[DIR] Barbara_2007_PMID_17124610 The transcription factor Gcr1 stimulates cell growth by participating in nutrient-responsive gene expression on a global level. [TXT]
[DIR] Barbosa_2015_PMID_25884705 Comparative transcriptomic analysis reveals similarities and dissimilarities in Saccharomyces cerevisiae wine strains response to nitrogen availability. [TXT]
[DIR] Barbosa_2015_PMID_26314747 Genomic expression program of Saccharomyces cerevisiae along a mixed-culture wine fermentation with Hanseniaspora guilliermondii [TXT]
[DIR] Barreto_2012_PMID_23039231 The short-term response of yeast to potassium starvation. [TXT]
[DIR] Batista-Nascimento_2013_PMID_23295455 Yeast protective response to arsenate involves the repression of the high affinity iron uptake system. [TXT]
[DIR] Bedalov_2001_PMID_11752457 Identification of a small molecule inhibitor of Sir2p. [TXT]
[DIR] Belli_2004_PMID_14722110 Saccharomyces cerevisiae glutaredoxin 5-deficient cells subjected to continuous oxidizing conditions are affected in the expression of specific sets of genes. [TXT]
[DIR] Benton_2006_PMID_17140446 Analyzing the dose-dependence of the Saccharomyces cerevisiae global transcriptional response to methyl methanesulfonate and ionizing radiation. [TXT]
[DIR] Bernstein_2000_PMID_11095743 Genomewide studies of histone deacetylase function in yeast. [TXT]
[DIR] Berry_2008_PMID_18753408 Stress-activated genomic expression changes serve a preparative role for impending stress in yeast. [TXT]
[DIR] Bessonov_2013_PMID_24130853 Functional analyses of NSF1 in wine yeast using interconnected correlation clustering and molecular analyses. [TXT]
[DIR] Bester_2012_PMID_22384390 Many Saccharomyces cerevisiae Cell Wall Protein Encoding Genes Are Coregulated by Mss11, but Cellular Adhesion Phenotypes Appear Only Flo Protein Dependent. [TXT]
[DIR] Boer_2005_PMID_15949974 Contribution of the Saccharomyces cerevisiae transcriptional regulator Leu3p to physiology and gene expression in nitrogen- and carbon-limited chemostat cultures. [TXT]
[DIR] Boer_2007_PMID_17419774 Transcriptional responses of Saccharomyces cerevisiae to preferred and nonpreferred nitrogen sources in glucose-limited chemostat cultures. [TXT]
[DIR] Borde_2009_PMID_19078966 Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites. [TXT]
[DIR] Braberg_2013_PMID_23932120 From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II. [TXT]
[DIR] Bradley_2009_PMID_19180179 Coordinated concentration changes of transcripts and metabolites in Saccharomyces cerevisiae. [TXT]
[DIR] Brauer_2005_PMID_15758028 Homeostatic adjustment and metabolic remodeling in glucose-limited yeast cultures. [TXT]
[DIR] Brauer_2008_PMID_17959824 Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast. [TXT]
[DIR] Braun_2013_PMID_23207903 14-3-3 (Bmh) proteins regulate combinatorial transcription following RNA polymerase II recruitment by binding at Adr1-dependent promoters in Saccharomyces cerevisiae. [TXT]
[DIR] Brem_2005_PMID_15659551 The landscape of genetic complexity across 5,700 gene expression traits in yeast. [TXT]
[DIR] Brion_2013_PMID_24094006 Differential adaptation to multi-stressed conditions of wine fermentation revealed by variations in yeast regulatory networks. [TXT]
[DIR] Bristow_2014_PMID_25200947 Checkpoints couple transcription network oscillator dynamics to cell-cycle progression. [TXT]
[DIR] Bro_2003_PMID_12791685 Transcriptional, proteomic, and metabolic responses to lithium in galactose-grown yeast cells. [TXT]
[DIR] Brown_2008_PMID_18422925 Cascading transcriptional effects of a naturally occurring frameshift mutation in Saccharomyces cerevisiae. [TXT]
[DIR] Bulik_2003_PMID_14555471 Chitin synthesis in Saccharomyces cerevisiae in response to supplementation of growth medium with glucosamine and cell wall stress. [TXT]
[DIR] Caba_2005_PMID_15878181 Differentiating mechanisms of toxicity using global gene expression analysis in Saccharomyces cerevisiae. [TXT]
[DIR] Canadell_2015_PMID_25425491 Functional interactions between potassium and phosphate homeostasis in Saccharomyces cerevisiae. [TXT]
[DIR] Capaldi_2008_PMID_18931682 Structure and function of a transcriptional network activated by the MAPK Hog1. [TXT]
[DIR] Carmel-Harel_2001_PMID_11169101 Role of thioredoxin reductase in the Yap1p-dependent response to oxidative stress in Saccharomyces cerevisiae. [TXT]
[DIR] Carroll_2001_PMID_11675494 Chemical inhibition of the Pho85 cyclin-dependent kinase reveals a role in the environmental stress response. [TXT]
[DIR] Carter_2007_PMID_17389876 Prediction of phenotype and gene expression for combinations of mutations. [TXT]
[DIR] Carter_2012_PMID_23071457 Use of pleiotropy to model genetic interactions in a population. [TXT]
[DIR] Casado_2011_PMID_21749328 The role of the protein kinase A pathway in the response to alkaline pH stress in yeast. [TXT]
[DIR] Casamayor_2012_PMID_22372618 The role of the Snf1 kinase in the adaptive response of Saccharomyces cerevisiae to alkaline pH stress. [TXT]
[DIR] Causton_2001_PMID_11179418 Remodeling of yeast genome expression in response to environmental changes. [TXT]
[DIR] Celona_2011_PMID_21738444 Substantial histone reduction modulates genomewide nucleosomal occupancy and global transcriptional output. [TXT]
[DIR] Chan_2008_PMID_18708563 Anoxia-induced suspended animation in budding yeast as an experimental paradigm for studying oxygen-regulated gene expression. [TXT]
[DIR] Chang_2013_PMID_23660188 Kdx1 regulates RCK1 gene expression by interacting with Rlm1 in Saccharomyces cerevisiae. [TXT]
[DIR] Chang_2013_PMID_24051094 Rck1 up-regulates Hog1 activity by down-regulating Slt2 activity in Saccharomyces cerevisiae. [TXT]
[DIR] Chasman_2014_PMID_25411400 Pathway connectivity and signaling coordination in the yeast stress-activated signaling network. [TXT]
[DIR] Chechik_2008_PMID_18953355 Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network. [TXT]
[DIR] Chen_2006_PMID_16397762 Coordinate regulation of multiple and distinct biosynthetic pathways by TOR and PKA kinases in S. cerevisiae. [TXT]
[DIR] Cheung_2008_PMID_18998772 Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. [TXT]
[DIR] Chitikila_2002_PMID_12419230 Interplay of TBP inhibitors in global transcriptional control. [TXT]
[DIR] Chiu_2011_PMID_21147769 Cell cycle sensing of oxidative stress in Saccharomyces cerevisiae by oxidation of a specific cysteine residue in the transcription factor Swi6p. [TXT]
[DIR] Cho_1998_PMID_9702192 A genome-wide transcriptional analysis of the mitotic cell cycle. [TXT]
[DIR] Chu_1998_PMID_9784122 The transcriptional program of sporulation in budding yeast. [TXT]
[DIR] Chua_2006_PMID_16880382 Identifying transcription factor functions and targets by phenotypic activation. [TXT]
[DIR] Chujo_2015_PMID_25304510 Acquisition of the ability to assimilate mannitol by Saccharomyces cerevisiae through dysfunction of the general corepressor Tup1-Cyc8. [TXT]
[DIR] Chumnanpuen_2012_PMID_22622761 Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol-choline and Snf1 in controlling lipid biosynthesis in yeast. [TXT]
[DIR] Cipollina_2008_PMID_18174152 Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study. [TXT]
[DIR] Cipollina_2008_PMID_18524923 Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis. [TXT]
[DIR] Clark_2002_PMID_11988574 Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays. [TXT]
[DIR] Cohen_2002_PMID_12006656 Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks. [TXT]
[DIR] Crosas_2015_PMID_25715111 The yeast zeta-crystallin/NADPH:quinone oxidoreductase (Zta1p) is under nutritional control by the target of rapamycin pathway and is involved in the regulation of argininosuccinate lyase mRNA half-life. [TXT]
[DIR] Cullen_2004_PMID_15256499 A signaling mucin at the head of the Cdc42- and MAPK-dependent filamentous growth pathway in yeast. [TXT]
[DIR] Daran-Lapujade_2004_PMID_14630934 Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study. [TXT]
[DIR] Daran-Lapujade_2007_PMID_17898166 The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels. [TXT]
[DIR] De_Nadal_2004_PMID_14737171 The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes. [TXT]
[DIR] De_Nicola_2007_PMID_17933919 Physiological and transcriptional responses of Saccharomyces cerevisiae to zinc limitation in chemostat cultures. [TXT]
[DIR] DeRisi_1997_PMID_9381177 Exploring the metabolic and genetic control of gene expression on a genomic scale. [TXT]
[DIR] Dettman_2007_PMID_17538619 Incipient speciation by divergent adaptation and antagonistic epistasis in yeast. [TXT]
[DIR] Dion_2005_PMID_15795371 Genomic characterization reveals a simple histone H4 acetylation code. [TXT]
[DIR] Dominissini_2012_PMID_22575960 Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. [TXT]
[DIR] Dong_2007_PMID_17317628 YRA1 autoregulation requires nuclear export and cytoplasmic Edc3p-mediated degradation of its pre-mRNA. [TXT]
[DIR] Dorfel_2016_PMID_27668839 Proteomic and genomic characterization of a yeast model for Ogden syndrome [TXT]
[DIR] Dori-Bachash_2011_PMID_21811398 Coupled evolution of transcription and mRNA degradation. [TXT]
[DIR] Drozdova_2014_PMID_25227157 Transcriptional response to the [ISP ] prion of Saccharomyces cerevisiae differs from that induced by the deletion of its structural gene, SFP1. [TXT]
[DIR] Dubacq_2006_PMID_16328372 Role of the iron mobilization and oxidative stress regulons in the genomic response of yeast to hydroxyurea. [TXT]
[DIR] Duvel_2003_PMID_12820961 Multiple roles of Tap42 in mediating rapamycin-induced transcriptional changes in yeast. [TXT]
[DIR] Dymond_2011_PMID_21918511 Synthetic chromosome arms function in yeast and generate phenotypic diversity by design. [TXT]
[DIR] Epstein_2001_PMID_11179416 Genome-wide responses to mitochondrial dysfunction. [TXT]
[DIR] Eriksson_2005_PMID_16199888 Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements. [TXT]
[DIR] Erlich_2008_PMID_19005567 Anc1, a protein associated with multiple transcription complexes, is involved in postreplication repair pathway in S. cerevisiae. [TXT]
[DIR] Felipe-Abrio_2015_PMID_25452497 RNA polymerase II contributes to preventing transcription-mediated replication fork stalls. [TXT]
[DIR] Ferea_1999_PMID_10449761 Systematic changes in gene expression patterns following adaptive evolution in yeast. [TXT]
[DIR] Fleming_2002_PMID_11830665 Complementary whole-genome technologies reveal the cellular response to proteasome inhibition by PS-341. [TXT]
[DIR] Flom_2012_PMID_22461145 Identification of an Hsp90 mutation that selectively disrupts cAMP/PKA signaling in Saccharomyces cerevisiae. [TXT]
[DIR] Friedlander_2006_PMID_16542486 Modulation of the transcription regulatory program in yeast cells committed to sporulation. [TXT]
[DIR] Fry_2003_PMID_12875747 DNA damage and stress transcripts in Saccharomyces cerevisiae mutant sgs1. [TXT]
[DIR] Fry_2006_PMID_17163986 The DNA-damage signature in Saccharomyces cerevisiae is associated with single-strand breaks in DNA. [TXT]
[DIR] Gaillard_2014_PMID_24603480 Cleavage factor I links transcription termination to DNA damage response and genome integrity maintenance in Saccharomyces cerevisiae. [TXT]
[DIR] Galitski_1999_PMID_10398601 Ploidy regulation of gene expression. [TXT]
[DIR] Garcia-Martinez_2016_PMID_26717982 The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons [TXT]
[DIR] Garcia-Martinez_2016_PMID_27648972 Growth rate controls mRNA turnover in steady and non-steady states [TXT]
[DIR] Garcia-Oliver_2013_PMID_23599000 A novel role for Sem1 and TREX-2 in transcription involves their impact on recruitment and H2B deubiquitylation activity of SAGA. [TXT]
[DIR] Garcia-Rodriguez_2012_PMID_22493290 Impaired manganese metabolism causes mitotic misregulation. [TXT]
[DIR] Garcia_2009_PMID_19234305 The high osmotic response and cell wall integrity pathways cooperate to regulate transcriptional responses to zymolyase-induced cell wall stress in Saccharomyces cerevisiae. [TXT]
[DIR] Gardner_2005_PMID_15797381 Degradation-mediated protein quality control in the nucleus. [TXT]
[DIR] Gardner_2005_PMID_15988024 Ubp10/Dot4p regulates the persistence of ubiquitinated histone H2B: distinct roles in telomeric silencing and general chromatin. [TXT]
[DIR] Garrido-Godino_2016_PMID_27001033 Rpb1 foot mutations demonstrate a major role of Rpb4 in mRNA stability during stress situations in yeast [TXT]
[DIR] Gasch_2000_PMID_11102521 Genomic expression programs in the response of yeast cells to environmental changes. [TXT]
[DIR] Gasch_2001_PMID_11598186 Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p. [TXT]
[DIR] Gavalda_2016_PMID_27035147 Excess of Yra1 RNA-Binding Factor Causes Transcription-Dependent Genome Instability, Replication Impairment and Telomere Shortening [TXT]
[DIR] Geijer_2012_PMID_23066959 Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response. [TXT]
[DIR] Ghazal_2005_PMID_15798187 Genome-wide prediction and analysis of yeast RNase III-dependent snoRNA processing signals. [TXT]
[DIR] Gil_2011_PMID_21842488 Transcriptional profiling in Saccharomyces cerevisiae relevant for predicting alachlor mechanisms of toxicity. [TXT]
[DIR] Gitter_2013_PMID_23064748 Linking the signaling cascades and dynamic regulatory networks controlling stress responses. [TXT]
[DIR] Golla_2015_PMID_25919230 Molecular cytotoxicity mechanisms of allyl alcohol (acrolein) in budding yeast. [TXT]
[DIR] Golla_2016_PMID_27734932 Combined Transcriptomics and Chemical-Genetics Reveal Molecular Mode of Action of Valproic acid, an Anticancer Molecule using Budding Yeast Model. [TXT]
[DIR] Gomar-Alba_2015_PMID_26048894 Response of yeast cells to high glucose involves molecular and physiological differences when compared to other osmostress conditions. [TXT]
[DIR] Gomez-Gonzalez_2011_PMID_21701562 Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles. [TXT]
[DIR] Gonzalez-Aguilera_2011_PMID_21680710 Nab2 functions in the metabolism of RNA driven by polymerases II and III. [TXT]
[DIR] Gonzalez_2006_PMID_16973600 Transcriptional profiling of the protein phosphatase 2C family in yeast provides insights into the unique functional roles of Ptc1. [TXT]
[DIR] Gonzalez_2013_PMID_23704987 Ptc6 is required for proper rapamycin-induced down-regulation of the genes coding for ribosomal and rRNA processing proteins in S. cerevisiae. [TXT]
[DIR] Goossens_2015_PMID_25873380 Molecular mechanism of flocculation self-recognition in yeast and its role in mating and survival. [TXT]
[DIR] Gresham_2008_PMID_19079573 The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. [TXT]
[DIR] Gross_2000_PMID_10922376 Identification of the copper regulon in Saccharomyces cerevisiae by DNA microarrays. [TXT]
[DIR] Grund_2008_PMID_18762579 The inner nuclear membrane protein Src1 associates with subtelomeric genes and alters their regulated gene expression. [TXT]
[DIR] Guan_2006_PMID_17166056 Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast. [TXT]
[DIR] Guan_2012_PMID_22851651 Cellular memory of acquired stress resistance in Saccharomyces cerevisiae. [TXT]
[DIR] Guo_2006_PMID_16122766 Analysis of cellular responses to aflatoxin B(1) in yeast expressing human cytochrome P450 1A2 using cDNA microarrays. [TXT]
[DIR] Hao_2012_PMID_22179789 Signal-dependent dynamics of transcription factor translocation controls gene expression. [TXT]
[DIR] Hardwick_1999_PMID_10611304 Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins. [TXT]
[DIR] Hasunuma_2014_PMID_23916856 Co-expression of TAL1 and ADH1 in recombinant xylose-fermenting Saccharomyces cerevisiae improves ethanol production from lignocellulosic hydrolysates in the presence of furfural. [TXT]
[DIR] Haugen_2004_PMID_15575969 Integrating phenotypic and expression profiles to map arsenic-response networks. [TXT]
[DIR] Hazelwood_2008_PMID_18281432 The Ehrlich pathway for fusel alcohol production: a century of research on Saccharomyces cerevisiae metabolism. [TXT]
[DIR] Hebly_2014_PMID_24814792 Physiological and transcriptional responses of anaerobic chemostat cultures of Saccharomyces cerevisiae subjected to diurnal temperature cycles. [TXT]
[DIR] Herrera-Moyano_2014_PMID_24636987 The yeast and human FACT chromatin-reorganizing complexes solve R-loop-mediated transcription-replication conflicts. [TXT]
[DIR] Hickman_2007_PMID_17785431 Heme levels switch the function of Hap1 of Saccharomyces cerevisiae between transcriptional activator and transcriptional repressor. [TXT]
[DIR] Hodges_2015_PMID_25971662 Histone Sprocket Arginine Residues Are Important for Gene Expression, DNA Repair, and Cell Viability in Saccharomyces cerevisiae. [TXT]
[DIR] Hoffman_2015_PMID_25609572 Break-seq reveals hydroxyurea-induced chromosome fragility as a result of unscheduled conflict between DNA replication and transcription. [TXT]
[DIR] Holbein_2009_PMID_19324962 Cordycepin interferes with 3' end formation in yeast independently of its potential to terminate RNA chain elongation. [TXT]
[DIR] Hong_2011_PMID_21715660 Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis. [TXT]
[DIR] Hong_2012_PMID_22904057 Recovery of phenotypes obtained by adaptive evolution through inverse metabolic engineering. [TXT]
[DIR] Hou_2014_PMID_24237754 Management of the endoplasmic reticulum stress by activation of the heat shock response in yeast. [TXT]
[DIR] Hu_2007_PMID_17417638 Genetic reconstruction of a functional transcriptional regulatory network. [TXT]
[DIR] Huang_2002_PMID_12077337 Dissection of a complex phenotype by functional genomics reveals roles for the yeast cyclin-dependent protein kinase Pho85 in stress adaptation and cell integrity. [TXT]
[DIR] Huang_2004_PMID_15539461 Finding new components of the target of rapamycin (TOR) signaling network through chemical genetics and proteome chips. [TXT]
[DIR] Hughes_2000_PMID_10929718 Functional discovery via a compendium of expression profiles. [TXT]
[DIR] Huisinga_2007_PMID_17407552 A TATA binding protein regulatory network that governs transcription complex assembly. [TXT]
[DIR] Ideker_2001_PMID_11340206 Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. [TXT]
[DIR] Irvin_2006_PMID_16407318 Genome-wide transcriptional dependence on TAF1 functional domains. [TXT]
[DIR] Iwahashi_2007_PMID_17408496 Evaluation of toxicity of the mycotoxin citrinin using yeast ORF DNA microarray and Oligo DNA microarray. [TXT]
[DIR] Iwahashi_2007_PMID_18075112 Combined cadmium and thiuram show synergistic toxicity and induce mitochondrial petite mutants. [TXT]
[DIR] Jaehnig_2013_PMID_23810556 Checkpoint kinases regulate a global network of transcription factors in response to DNA damage. [TXT]
[DIR] James_2007_PMID_17660549 A SAGA-independent function of SPT3 mediates transcriptional deregulation in a mutant of the Ccr4-not complex in Saccharomyces cerevisiae. [TXT]
[DIR] Jansen_2004_PMID_15066785 Prolonged maltose-limited cultivation of Saccharomyces cerevisiae selects for cells with improved maltose affinity and hypersensitivity. [TXT]
[DIR] Jansen_2005_PMID_15870473 Prolonged selection in aerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae causes a partial loss of glycolytic capacity. [TXT]
[DIR] Jimeno_2011_PMID_21149575 New suppressors of THO mutations identify Thp3 (Ypr045c)-Csn12 as a protein complex involved in transcription elongation. [TXT]
[DIR] Jin_2004_PMID_15528549 Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. [TXT]
[DIR] Jin_2007_PMID_17664279 Simultaneous mutation of methylated lysine residues in histone H3 causes enhanced gene silencing, cell cycle defects, and cell lethality in Saccharomyces cerevisiae. [TXT]
[DIR] Johanson_2006_PMID_16440349 Gene expression and survival changes in Saccharomyces cerevisiae during suspension culture. [TXT]
[DIR] Johansson_2007_PMID_18087042 Association of yeast Upf1p with direct substrates of the NMD pathway. [TXT]
[DIR] Jones_2003_PMID_14570984 Transcriptome profiling of a Saccharomyces cerevisiae mutant with a constitutively activated Ras/cAMP pathway. [TXT]
[DIR] Joseph-Strauss_2007_PMID_17999778 Spore germination in Saccharomyces cerevisiae: global gene expression patterns and cell cycle landmarks. [TXT]
[DIR] Kao_2008_PMID_19029899 Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae. [TXT]
[DIR] Kaplan_2008_PMID_19023413 Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast. [TXT]
[DIR] Keller_2001_PMID_11504737 Haa1, a protein homologous to the copper-regulated transcription factor Ace1, is a novel transcriptional activator. [TXT]
[DIR] Kelly_2006_PMID_16720269 Cellular effects induced by the antitumor agent azinomycin B. [TXT]
[DIR] Khakhina_2015_PMID_25724885 Control of Plasma Membrane Permeability by ABC Transporters. [TXT]
[DIR] Kim_2009_PMID_19456872 Dissecting the pleiotropic consequences of a quantitative trait nucleotide. [TXT]
[DIR] Kitagawa_2002_PMID_12269742 Effects of the pesticide thiuram: genome-wide screening of indicator genes by yeast DNA microarray. [TXT]
[DIR] Kitagawa_2003_PMID_12854720 Correlation of the structures of agricultural fungicides to gene expression in Saccharomyces cerevisiae upon exposure to toxic doses. [TXT]
[DIR] Kitagawa_2005_PMID_16377885 Effects of iodine on global gene expression in Saccharomyces cerevisiae. [TXT]
[DIR] Klecker_2015_PMID_26669658 Interaction of MDM33 with mitochondrial inner membrane homeostasis pathways in yeast [TXT]
[DIR] Klevecz_2004_PMID_14734811 A genomewide oscillation in transcription gates DNA replication and cell cycle. [TXT]
[DIR] Klockow_2008_PMID_18455824 In vivo regulation of glucose transporter genes at glucose concentrations between 0 and 500 mg/L in a wild type of Saccharomyces cerevisiae. [TXT]
[DIR] Knijnenburg_2007_PMID_17241460 Exploiting combinatorial cultivation conditions to infer transcriptional regulation. [TXT]
[DIR] Knijnenburg_2009_PMID_19173729 Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: a quantitative analysis of a compendium of chemostat-based transcriptome data. [TXT]
[DIR] Komili_2007_PMID_17981122 Functional specificity among ribosomal proteins regulates gene expression. [TXT]
[DIR] Kresnowati_2006_PMID_16969341 When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation. [TXT]
[DIR] Kugler_2016_PMID_27245696 Ribosome quality control is a central protection mechanism for yeast exposed to deoxynivalenol and trichothecin [TXT]
[DIR] Kugou_2007_PMID_17396017 Mre11 mediates gene regulation in yeast spore development. [TXT]
[DIR] Kuhn_2001_PMID_11154278 Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source. [TXT]
[DIR] Kundaje_2008_PMID_19008939 A predictive model of the oxygen and heme regulatory network in yeast. [TXT]
[DIR] Kuranda_2006_PMID_16925551 Investigating the caffeine effects in the yeast Saccharomyces cerevisiae brings new insights into the connection between TOR, PKC and Ras/cAMP signalling pathways. [TXT]
[DIR] Kvitek_2008_PMID_18927628 Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates. [TXT]
[DIR] Lai_2006_PMID_16963631 Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae. [TXT]
[DIR] Lai_2008_PMID_19105839 Comparison of the transcriptomic stress response evoked by antimycin A and oxygen deprivation in Saccharomyces cerevisiae. [TXT]
[DIR] Lai_2013_PMID_23893744 Yeast hEST1A/B (SMG5/6)-like proteins contribute to environment-sensing adaptive gene expression responses. [TXT]
[DIR] Landry_2006_PMID_16427747 Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes. [TXT]
[DIR] Landry_2007_PMID_17525304 Genetic properties influencing the evolvability of gene expression. [TXT]
[DIR] Landry_2014_PMID_24714560 Regulation of a transcription factor network by Cdk1 coordinates late cell cycle gene expression. [TXT]
[DIR] Lanza_2012_PMID_22558379 Linking yeast Gcn5p catalytic function and gene regulation using a quantitative, graded dominant mutant approach. [TXT]
[DIR] Larsson_2013_PMID_23991176 Functional studies of the yeast med5, med15 and med16 mediator tail subunits. [TXT]
[DIR] Leber_2004_PMID_15314654 IRE1-independent gain control of the unfolded protein response. [TXT]
[DIR] Lee_2000_PMID_12760044 Arrest, adaptation, and recovery following a chromosome double-strand break in Saccharomyces cerevisiae. [TXT]
[DIR] Lee_2005_PMID_15989963 Multiple RNA surveillance pathways limit aberrant expression of iron uptake mRNAs and prevent iron toxicity in S. cerevisiae. [TXT]
[DIR] Lenstra_2011_PMID_21596317 The specificity and topology of chromatin interaction pathways in yeast. [TXT]
[DIR] Lenstra_2013_PMID_24324601 The role of Ctk1 kinase in termination of small non-coding RNAs. [TXT]
[DIR] Levy_2007_PMID_17327914 Strategy of transcription regulation in the budding yeast. [TXT]
[DIR] Lewis_2014_PMID_24970865 Genetic architecture of ethanol-responsive transcriptome variation in Saccharomyces cerevisiae strains. [TXT]
[DIR] Li_2006_PMID_17043222 A rapid genome-scale response of the transcriptional oscillator to perturbation reveals a period-doubling path to phenotypic change. [TXT]
[DIR] Liang_2013_PMID_23985319 Dissociation of the H3K36 demethylase Rph1 from chromatin mediates derepression of environmental stress-response genes under genotoxic stress in Saccharomyces cerevisiae. [TXT]
[DIR] Licursi_2014_PMID_24164706 The COP9 signalosome is involved in the regulation of lipid metabolism and of transition metals uptake in Saccharomyces cerevisiae. [TXT]
[DIR] Liko_2007_PMID_17616518 Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae. [TXT]
[DIR] Lin_2012_PMID_22308403 Analysis of Gal4-directed transcription activation using Tra1 mutants selectively defective for interaction with Gal4. [TXT]
[DIR] Ling_2013_PMID_23826995 Transcriptome response to alkane biofuels in Saccharomyces cerevisiae: identification of efflux pumps involved in alkane tolerance. [TXT]
[DIR] Liu_2013_PMID_23435897 Anaerobic alpha-amylase production and secretion with fumarate as the final electron acceptor in Saccharomyces cerevisiae. [TXT]
[DIR] Lopez-Malo_2015_PMID_26194190 Evolutionary engineering of a wine yeast strain revealed a key role of inositol and mannoprotein metabolism during low-temperature fermentation. [TXT]
[DIR] Lopez_2000_PMID_10940042 Understanding the growth phenotype of the yeast gcr1 mutant in terms of global genomic expression patterns. [TXT]
[DIR] Lu_2014_PMID_24631914 The cohesin acetyltransferase Eco1 coordinates rDNA replication and transcription. [TXT]
[DIR] Lu_2016_PMID_27812096 Experimental Evolution Reveals Interplay between Sch9 and Polyploid Stability in Yeast [TXT]
[DIR] Lyons_2000_PMID_10884426 Genome-wide characterization of the Zap1p zinc-responsive regulon in yeast. [TXT]
[DIR] Macadangdang_2014_PMID_24939988 Evolution of histone 2A for chromatin compaction in eukaryotes. [TXT]
[DIR] Madhani_1999_PMID_10535956 Effectors of a developmental mitogen-activated protein kinase cascade revealed by expression signatures of signaling mutants. [TXT]
[DIR] Malagon_2006_PMID_16510790 Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil. [TXT]
[DIR] Marks_2008_PMID_18215224 Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response. [TXT]
[DIR] Marsit_2016_PMID_26549518 Horizontally acquired oligopeptide transporters favour adaptation of Saccharomyces cerevisiae wine yeast to oenological environment [TXT]
[DIR] Martin_2004_PMID_15476558 Rank Difference Analysis of Microarrays (RDAM), a novel approach to statistical analysis of microarray expression profiling data. [TXT]
[DIR] Marton_1998_PMID_9809554 Drug target validation and identification of secondary drug target effects using DNA microarrays. [TXT]
[DIR] Matsumoto_2005_PMID_16209719 The stress response against denatured proteins in the deletion of cytosolic chaperones SSA1/2 is different from heat-shock response in Saccharomyces cerevisiae. [TXT]
[DIR] Medintz_2007_PMID_17700863 Transcript and proteomic analyses of wild-type and gpa2 mutant Saccharomyces cerevisiae strains suggest a role for glycolytic carbon source sensing in pseudohyphal differentiation. [TXT]
[DIR] Menacho-Marquez_2007_PMID_17890903 Gcn2p regulates a G1/S cell cycle checkpoint in response to DNA damage. [TXT]
[DIR] Mendes-Ferreira_2007_PMID_17601813 Saccharomyces cerevisiae signature genes for predicting nitrogen deficiency during alcoholic fermentation. [TXT]
[DIR] Mendes_2013_PMID_23872557 Transcriptome-based characterization of interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp. bulgaricus in lactose-grown chemostat cocultures. [TXT]
[DIR] Mendiratta_2006_PMID_16415340 The DNA-binding domain of the yeast Spt10p activator includes a zinc finger that is homologous to foamy virus integrase. [TXT]
[DIR] Meneghini_2003_PMID_12628191 Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin. [TXT]
[DIR] Miller-Fleming_2014_PMID_24706893 Yeast DJ-1 superfamily members are required for diauxic-shift reprogramming and cell survival in stationary phase. [TXT]
[DIR] Mith_2015_PMID_25755096 The antifungal plant defensin AhPDF1.1b is a beneficial factor involved in adaptive response to zinc overload when it is expressed in yeast cells. [TXT]
[DIR] Miyake_2004_PMID_15192094 Genome-wide analysis of ARS (autonomously replicating sequence) binding factor 1 (Abf1p)-mediated transcriptional regulation in Saccharomyces cerevisiae. [TXT]
[DIR] Mizuguchi_2004_PMID_14645854 ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. [TXT]
[DIR] Mnaimneh_2004_PMID_15242642 Exploration of essential gene functions via titratable promoter alleles. [TXT]
[DIR] Mojzita_2014_PMID_25192596 Transcriptome of Saccharomyces cerevisiae during production of D-xylonate. [TXT]
[DIR] Molina-Navarro_2008_PMID_18424442 Comprehensive transcriptional analysis of the oxidative response in yeast. [TXT]
[DIR] Moreno-Cermeno_2013_PMID_24100161 Metabolic remodeling in frataxin-deficient yeast is mediated by Cth2 and Adr1. [TXT]
[DIR] Morillo-Huesca_2010_PMID_20711347 The SWR1 histone replacement complex causes genetic instability and genome-wide transcription misregulation in the absence of H2A.Z. [TXT]
[DIR] Munding_2010_PMID_21123654 Integration of a splicing regulatory network within the meiotic gene expression program of Saccharomyces cerevisiae. [TXT]
[DIR] Mutiu_2007_PMID_17447102 The role of histone ubiquitylation and deubiquitylation in gene expression as determined by the analysis of an HTB1(K123R) Saccharomyces cerevisiae strain. [TXT]
[DIR] Mutiu_2007_PMID_17660562 Structure/function analysis of the phosphatidylinositol-3-kinase domain of yeast tra1. [TXT]
[DIR] Nag_2008_PMID_18508805 A single amino acid change in histone H4 enhances UV survival and DNA repair in yeast. [TXT]
[DIR] Navarro-Tapia_2016_PMID_26925053 Ethanol Cellular Defense Induce Unfolded Protein Response in Yeast [TXT]
[DIR] Navlakha_2012_PMID_22916002 A network-based approach for predicting missing pathway interactions. [TXT]
[DIR] Ng_2013_PMID_24037263 Kinetochore function and chromosome segregation rely on critical residues in histones H3 and H4 in budding yeast. [TXT]
[DIR] Niles_2012_PMID_22307609 Plasma membrane recruitment and activation of the AGC kinase Ypk1 is mediated by target of rapamycin complex 2 (TORC2) and its effector proteins Slm1 and Slm2. [TXT]
[DIR] Noble_2015_PMID_25947166 Identification of new Saccharomyces cerevisiae variants of the MET2 and SKP2 genes controlling the sulfur assimilation pathway and the production of undesirable sulfur compounds during alcoholic fermentation. [TXT]
[DIR] O'Doherty_2013_PMID_24074273 Transcriptomic insights into the molecular response of Saccharomyces cerevisiae to linoleic acid hydroperoxide. [TXT]
[DIR] O'Duibhir_2014_PMID_24952590 Cell cycle population effects in perturbation studies. [TXT]
[DIR] O'Rourke_2004_PMID_14595107 Unique and redundant roles for HOG MAPK pathway components as revealed by whole-genome expression analysis. [TXT]
[DIR] Oberstrass_2006_PMID_16429156 Shape-specific recognition in the structure of the Vts1p SAM domain with RNA. [TXT]
[DIR] Oeser_2016_PMID_26800527 Dynamic Sumoylation of a Conserved Transcription Corepressor Prevents Persistent Inclusion Formation during Hyperosmotic Stress [TXT]
[DIR] Ogawa_2000_PMID_11102525 New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis. [TXT]
[DIR] Olesen_2002_PMID_12702272 The dynamics of the Saccharomyces carlsbergensis brewing yeast transcriptome during a production-scale lager beer fermentation. [TXT]
[DIR] Oliveira_2015_PMID_25888284 Inferring causal metabolic signals that regulate the dynamic TORC1-dependent transcriptome. [TXT]
[DIR] Orlandi_2004_PMID_14623890 Transcriptional profiling of ubp10 null mutant reveals altered subtelomeric gene expression and insurgence of oxidative stress response. [TXT]
[DIR] Orlando_2008_PMID_18463633 Global control of cell-cycle transcription by coupled CDK and network oscillators. [TXT]
[DIR] Oromendia_2012_PMID_23222101 Aneuploidy causes proteotoxic stress in yeast. [TXT]
[DIR] Pan_2008_PMID_18366703 Identification of molecular pathways affected by pterostilbene, a natural dimethylether analog of resveratrol. [TXT]
[DIR] Papini_2010_PMID_20815084 Phosphoglycerate mutase knock-out mutant Saccharomyces cerevisiae: physiological investigation and transcriptome analysis. [TXT]
[DIR] Parra_2006_PMID_16648479 Deciphering the roles of the histone H2B N-terminal domain in genome-wide transcription. [TXT]
[DIR] Parra_2007_PMID_17724083 Regulation of gene transcription by the histone H2A N-terminal domain. [TXT]
[DIR] Pastor-Flores_2015_PMID_26391581 Depletion of yeast PDK1 orthologs triggers a stress-like transcriptional response. [TXT]
[DIR] Pelechano_2008_PMID_17914747 The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast. [TXT]
[DIR] Penheiter_2005_PMID_16246724 A posttranscriptional role for the yeast Paf1-RNA polymerase II complex is revealed by identification of primary targets. [TXT]
[DIR] Pitkanen_2004_PMID_15520001 Excess mannose limits the growth of phosphomannose isomerase PMI40 deletion strain of Saccharomyces cerevisiae. [TXT]
[DIR] Pramila_2002_PMID_12464633 Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle. [TXT]
[DIR] Pramila_2006_PMID_16912276 The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle. [TXT]
[DIR] Primig_2000_PMID_11101837 The core meiotic transcriptome in budding yeasts. [TXT]
[DIR] Prinz_2004_PMID_14993204 Control of yeast filamentous-form growth by modules in an integrated molecular network. [TXT]
[DIR] Protchenko_2001_PMID_11673473 Three cell wall mannoproteins facilitate the uptake of iron in Saccharomyces cerevisiae. [TXT]
[DIR] Protchenko_2008_PMID_18326586 Role of PUG1 in inducible porphyrin and heme transport in Saccharomyces cerevisiae. [TXT]
[DIR] Puig_2008_PMID_18522836 Cooperation of two mRNA-binding proteins drives metabolic adaptation to iron deficiency. [TXT]
[DIR] Rachfall_2013_PMID_23071099 RACK1/Asc1p, a ribosomal node in cellular signaling. [TXT]
[DIR] Reinke_2006_PMID_16923813 Caffeine targets TOR complex I and provides evidence for a regulatory link between the FRB and kinase domains of Tor1p. [TXT]
[DIR] Renaud-Young_2015_PMID_25701288 The NuA4 complex promotes translesion synthesis (TLS)-mediated DNA damage tolerance. [TXT]
[DIR] Reyes_2014_PMID_24262517 Improving carotenoids production in yeast via adaptive laboratory evolution. [TXT]
[DIR] Rintala_2011_PMID_21348598 Transcriptional responses of Saccharomyces cerevisiae to shift from respiratory and respirofermentative to fully fermentative metabolism. [TXT]
[DIR] Ro_2008_PMID_18983675 Induction of multiple pleiotropic drug resistance genes in yeast engineered to produce an increased level of anti-malarial drug precursor, artemisinic acid. [TXT]
[DIR] Roberts_2000_PMID_10657304 Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. [TXT]
[DIR] Roberts_2006_PMID_16741729 Transcriptome profiling of Saccharomyces cerevisiae during a transition from fermentative to glycerol-based respiratory growth reveals extensive metabolic and structural remodeling. [TXT]
[DIR] Robertson_2000_PMID_10811893 The yeast A kinases differentially regulate iron uptake and respiratory function. [TXT]
[DIR] Robinson_2015_PMID_26130709 A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays. [TXT]
[DIR] Rodriguez-Lombardero_2014_PMID_24763424 Sky1 regulates the expression of sulfur metabolism genes in response to cisplatin. [TXT]
[DIR] Rodriguez-Navarro_2004_PMID_14718168 Sus1, a functional component of the SAGA histone acetylase complex and the nuclear pore-associated mRNA export machinery. [TXT]
[DIR] Rodriguez-Quinones_2009_PMID_19426543 Differential gene expression signatures for cell wall integrity found in chitin synthase II (chs2Delta) and myosin II (myo1Delta) deficient cytokinesis mutants of Saccharomyces cerevisiae. [TXT]
[DIR] Rollero_2016_PMID_26861624 Key role of lipid management in nitrogen and aroma metabolism in an evolved wine yeast strain [TXT]
[DIR] Romagnoli_2014_PMID_24733517 Deletion of the Saccharomyces cerevisiae ARO8 gene, encoding an aromatic amino acid transaminase, enhances phenylethanol production from glucose. [TXT]
[DIR] Ronen_2006_PMID_16381818 Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source. [TXT]
[DIR] Rosaleny_2005_PMID_16023114 Yeast HAT1 and HAT2 deletions have different life-span and transcriptome phenotypes. [TXT]
[DIR] Rossmann_2011_PMID_21474074 A common telomeric gene silencing assay is affected by nucleotide metabolism. [TXT]
[DIR] Rossouw_2009_PMID_19711068 Comparing the transcriptomes of wine yeast strains: toward understanding the interaction between environment and transcriptome during fermentation. [TXT]
[DIR] Roy_2013_PMID_23640720 Arboretum: reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules. [TXT]
[DIR] Rudra_2005_PMID_15692568 Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins. [TXT]
[DIR] Sabet_2004_PMID_15456858 Genome-wide analysis of the relationship between transcriptional regulation by Rpd3p and the histone H3 and H4 amino termini in budding yeast. [TXT]
[DIR] Saint_2014_PMID_24550006 The TAF9 C-terminal conserved region domain is required for SAGA and TFIID promoter occupancy to promote transcriptional activation. [TXT]
[DIR] Saldanha_2004_PMID_15240820 Nutritional homeostasis in batch and steady-state culture of yeast. [TXT]
[DIR] Salusjarvi_2008_PMID_18533012 Regulation of xylose metabolism in recombinant Saccharomyces cerevisiae. [TXT]
[DIR] Sameith_2015_PMID_26700642 A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions [TXT]
[DIR] Santos-Pereira_2013_PMID_24240235 The Npl3 hnRNP prevents R-loop-mediated transcription-replication conflicts and genome instability. [TXT]
[DIR] Sanz_2012_PMID_22621902 Chromatin remodeling by the SWI/SNF complex is essential for transcription mediated by the yeast cell wall integrity MAPK pathway. [TXT]
[DIR] Sapra_2004_PMID_15452114 Genome-wide analysis of pre-mRNA splicing: intron features govern the requirement for the second-step factor, Prp17 in Saccharomyces cerevisiae and Schizosaccharomyces pombe. [TXT]
[DIR] Sariki_2016_PMID_27718307 Sen1, the homolog of human Senataxin, is critical for cell survival through regulation of redox homeostasis, mitochondrial function, and the TOR pathway in Saccharomyces cerevisiae [TXT]
[DIR] Schawalder_2004_PMID_15616569 Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1. [TXT]
[DIR] Scherens_2006_PMID_16879428 Identification of direct and indirect targets of the Gln3 and Gat1 activators by transcriptional profiling in response to nitrogen availability in the short and long term. [TXT]
[DIR] Schosserer_2015_PMID_25635753 Methylation of ribosomal RNA by NSUN5 is a conserved mechanism modulating organismal lifespan. [TXT]
[DIR] Schrader_2006_PMID_16987817 Temperature-sensitive eIF5A mutant accumulates transcripts targeted to the nonsense-mediated decay pathway. [TXT]
[DIR] Segal_2003_PMID_12740579 Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. [TXT]
[DIR] Sha_2013_PMID_24073228 The genome-wide early temporal response of Saccharomyces cerevisiae to oxidative stress induced by cumene hydroperoxide. [TXT]
[DIR] Shakoury-Elizeh_2004_PMID_14668481 Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae. [TXT]
[DIR] Shalem_2008_PMID_18854817 Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation. [TXT]
[DIR] Shalem_2011_PMID_21931566 Transcriptome kinetics is governed by a genome-wide coupling of mRNA production and degradation: a role for RNA Pol II. [TXT]
[DIR] Shapira_2004_PMID_15371544 Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress. [TXT]
[DIR] Sheltzer_2012_PMID_22802626 Transcriptional consequences of aneuploidy. [TXT]
[DIR] Shirra_2008_PMID_18955495 A chemical genomics study identifies Snf1 as a repressor of GCN4 translation. [TXT]
[DIR] Shivaswamy_2008_PMID_18212068 Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response. [TXT]
[DIR] Simmons_Kovacs_2012_PMID_22306294 Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network. [TXT]
[DIR] Simons_2006_PMID_16870766 Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae. [TXT]
[DIR] Singh_2005_PMID_16332871 Transcriptional response of Saccharomyces cerevisiae to desiccation and rehydration. [TXT]
[DIR] Slavov_2014_PMID_24767987 Constant growth rate can be supported by decreasing energy flux and increasing aerobic glycolysis. [TXT]
[DIR] Smith_2002_PMID_12135984 Transcriptome profiling to identify genes involved in peroxisome assembly and function. [TXT]
[DIR] Smith_2007_PMID_17551510 Transcriptional responses to fatty acid are coordinated by combinatorial control. [TXT]
[DIR] Smith_2008_PMID_18416601 Gene-environment interaction in yeast gene expression. [TXT]
[DIR] Spedale_2012_PMID_21976730 Tight cooperation between Mot1p and NC2beta in regulating genome-wide transcription, repression of transcription following heat shock induction and genetic interaction with SAGA. [TXT]
[DIR] Spellman_1998_PMID_9843569 Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. [TXT]
[DIR] Sprouse_2009_PMID_19098311 TATA-binding protein variants that bypass the requirement for Mot1 in vivo. [TXT]
[DIR] Stern_2007_PMID_17453047 Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge. [TXT]
[DIR] Stovicek_2014_PMID_24533484 Global changes in gene expression associated with phenotypic switching of wild yeast. [TXT]
[DIR] Sudarsanam_2000_PMID_10725359 Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae. [TXT]
[DIR] Suzuki_2012_PMID_22897823 Comprehensive gene expression analysis of type B trichothecenes. [TXT]
[DIR] Suzuki_2013_PMID_23325148 RNA preparation of Saccharomyces cerevisiae using the digestion method may give misleading results. [TXT]
[DIR] Suzuki_2015_PMID_25609182 Low toxicity of deoxynivalenol-3-glucoside in microbial cells. [TXT]
[DIR] Tai_2005_PMID_15496405 Two-dimensional transcriptome analysis in chemostat cultures. Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae. [TXT]
[DIR] Takagi_2005_PMID_15837426 Ubiquitin ligase activity of TFIIH and the transcriptional response to DNA damage. [TXT]
[DIR] Takahashi_2011_PMID_21474073 Dot1 and histone H3K79 methylation in natural telomeric and HM silencing. [TXT]
[DIR] Tanaka_2006_PMID_16943074 Functional genomic analysis of commercial baker's yeast during initial stages of model dough-fermentation. [TXT]
[DIR] Tesniere_2013_PMID_23658613 Impact of nutrient imbalance on wine alcoholic fermentations: nitrogen excess enhances yeast cell death in lipid-limited must. [TXT]
[DIR] Thibault_2011_PMID_22143797 The unfolded protein response supports cellular robustness as a broad-spectrum compensatory pathway. [TXT]
[DIR] Thibault_2012_PMID_23000174 The membrane stress response buffers lethal effects of lipid disequilibrium by reprogramming the protein homeostasis network. [TXT]
[DIR] Thierry_2015_PMID_25635677 Macrotene chromosomes provide insights to a new mechanism of high-order gene amplification in eukaryotes. [TXT]
[DIR] Thorsen_2007_PMID_17327492 Quantitative transcriptome, proteome, and sulfur metabolite profiling of the Saccharomyces cerevisiae response to arsenite. [TXT]
[DIR] Tirosh_2008_PMID_18197176 On the relation between promoter divergence and gene expression evolution. [TXT]
[DIR] Tompa_2007_PMID_17179083 Histone H3 lysine 36 methylation antagonizes silencing in Saccharomyces cerevisiae independently of the Rpd3S histone deacetylase complex. [TXT]
[DIR] Torres_2007_PMID_17702937 Effects of aneuploidy on cellular physiology and cell division in haploid yeast. [TXT]
[DIR] Travers_2000_PMID_10847680 Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation. [TXT]
[DIR] Travesa_2012_PMID_22333915 DNA replication stress differentially regulates G1/S genes via Rad53-dependent inactivation of Nrm1. [TXT]
[DIR] Tsang_2014_PMID_24647101 Superoxide dismutase 1 acts as a nuclear transcription factor to regulate oxidative stress resistance. [TXT]
[DIR] Tu_2005_PMID_16254148 Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes. [TXT]
[DIR] Tyo_2012_PMID_22380681 Imbalance of heterologous protein folding and disulfide bond formation rates yields runaway oxidative stress. [TXT]
[DIR] Urban_2007_PMID_17560372 Sch9 is a major target of TORC1 in Saccharomyces cerevisiae. [TXT]
[DIR] van_Attikum_2004_PMID_15607975 Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair. [TXT]
[DIR] van_de_Pasch_2013_PMID_23785440 Centromere binding and a conserved role in chromosome stability for SUMO-dependent ubiquitin ligases. [TXT]
[DIR] van_den_Brink_2008_PMID_18304306 New insights into the Saccharomyces cerevisiae fermentation switch: dynamic transcriptional response to anaerobicity and glucose-excess. [TXT]
[DIR] Vemuri_2007_PMID_17287356 Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae. [TXT]
[DIR] Venkatasubrahmanyam_2007_PMID_17925448 Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z. [TXT]
[DIR] Verzijlbergen_2011_PMID_21998594 A barcode screen for epigenetic regulators reveals a role for the NuB4/HAT-B histone acetyltransferase complex in histone turnover. [TXT]
[DIR] Vizoso-Vazquez_2012_PMID_22189861 Ixr1p and the control of the Saccharomyces cerevisiae hypoxic response. [TXT]
[DIR] Vos_2015_PMID_26369953 Growth-rate dependency of de novo resveratrol production in chemostat cultures of an engineered Saccharomyces cerevisiae strain [TXT]
[DIR] Wang_2002_PMID_11972065 Precision and functional specificity in mRNA decay. [TXT]
[DIR] Wenger_2011_PMID_21829391 Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency. [TXT]
[DIR] Williams_2002_PMID_12370439 The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast. [TXT]
[DIR] Willis_2008_PMID_18604275 Genetic interactions of MAF1 identify a role for Med20 in transcriptional repression of ribosomal protein genes. [TXT]
[DIR] Worley_2013_PMID_23643537 Inositol pyrophosphates regulate cell growth and the environmental stress response by activating the HDAC Rpd3L. [TXT]
[DIR] Wu_2008_PMID_18673560 Differential control of Zap1-regulated genes in response to zinc deficiency in Saccharomyces cerevisiae. [TXT]
[DIR] Wyrick_1999_PMID_10586882 Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast. [TXT]
[DIR] Xue-Franzen_2013_PMID_23865462 Distinct roles of the Gcn5 histone acetyltransferase revealed during transient stress-induced reprogramming of the genome. [TXT]
[DIR] Yamamoto_2005_PMID_15647283 Identification of a novel class of target genes and a novel type of binding sequence of heat shock transcription factor in Saccharomyces cerevisiae. [TXT]
[DIR] Yamane-Sando_2014_PMID_24510621 Fpk1/2 kinases regulate cellular sphingoid long-chain base abundance and alter cellular resistance to LCB elevation or depletion. [TXT]
[DIR] Yarragudi_2007_PMID_17158163 Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae. [TXT]
[DIR] Yeang_2005_PMID_15998451 Validation and refinement of gene-regulatory pathways on a network of physical interactions. [TXT]
[DIR] Yiu_2008_PMID_18245757 Pathways change in expression during replicative aging in Saccharomyces cerevisiae. [TXT]
[DIR] Yona_2012_PMID_23197825 Chromosomal duplication is a transient evolutionary solution to stress. [TXT]
[DIR] Yoshimoto_2002_PMID_12058033 Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae. [TXT]
[DIR] Yu_2006_PMID_16461773 Contribution of the histone H3 and H4 amino termini to Gcn4p- and Gcn5p-mediated transcription in yeast. [TXT]
[DIR] Yun_2000_PMID_10744769 Desferrioxamine-mediated iron uptake in Saccharomyces cerevisiae. Evidence for two pathways of iron uptake. [TXT]
[DIR] Zeng_2016_PMID_27485516 Transcriptomes of a xylose-utilizing industrial flocculating Saccharomyces cerevisiae strain cultured in media containing different sugar sources [TXT]
[DIR] Zhang_2011_PMID_22068328 Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae. [TXT]
[DIR] Zhang_2015_PMID_25897127 ChiNet uncovers rewired transcription subnetworks in tolerant yeast for advanced biofuels conversion. [TXT]
[DIR] Zhou_2011_PMID_21700227 Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4. [TXT]
[DIR] Zhu_2000_PMID_10894548 Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth. [TXT]
[DIR] Zhu_2008_PMID_18552845 Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. [TXT]
[DIR] Zhu_2009_PMID_19158363 High-resolution DNA-binding specificity analysis of yeast transcription factors. [TXT]
[DIR] Zhu_2015_PMID_26138482 Mediator tail subunits can form amyloid-like aggregates in vivo and affect stress response in yeast. [TXT]
[DIR] archive Datasets that were used with Expression Connections [TXT]
[DIR] all_spell_exprconn_pcl.tar.gz Compressed file with all processed data in SPELL, in PCL format